Week 1
Text file example - rhododendrons in Origin of Species (Right-click, save linked file):
http://www.gutenberg.org/cache/epub/1228/pg1228.txt
Ngan's flanking sequence file (Click link to download):
Copia_Full_Element_Flank.fasta
grep -c -E ".TGCAG|C.GCAG|CT.CAG|CTG.AG|CTGC.G|CTGCA." Copia_Full_Element_Flank.fasta
Text file example - rhododendrons in Origin of Species (Right-click, save linked file):
http://www.gutenberg.org/cache/epub/1228/pg1228.txt
Today's Inspiration:
Is a short sequence motif (ex. a restriction site) located in a long sequence?
How many examples of that motif exist?
How many sequences exist that could mutate to become this restriction site? (for example, are one or two bases away from the motif)
Copia_Full_Element_Flank.fasta
grep -c -E ".TGCAG|C.GCAG|CT.CAG|CTG.AG|CTGC.G|CTGCA." Copia_Full_Element_Flank.fasta
